{"id":48,"date":"2015-10-14T03:54:20","date_gmt":"2015-10-14T03:54:20","guid":{"rendered":"http:\/\/caslabs.case.edu\/tolbert\/?page_id=48"},"modified":"2020-06-17T15:00:11","modified_gmt":"2020-06-17T15:00:11","slug":"links","status":"publish","type":"page","link":"https:\/\/caslabs.case.edu\/tolbert\/links\/","title":{"rendered":"Links"},"content":{"rendered":"<hr \/>\n<h3><span style=\"color: #003366\"><strong>Tools<\/strong><\/span><\/h3>\n<hr \/>\n<p><a href=\"http:\/\/ambermd.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">AmberMD<\/a> &#8211; Molecular dynamics simulation software<\/p>\n<p><a href=\"http:\/\/www.embl-hamburg.de\/biosaxs\/software.html\" target=\"_blank\" rel=\"noopener noreferrer\">ATSAS<\/a>\u00a0&#8211; Small-angle X-ray scattering processing &amp; analysis software suite<\/p>\n<p><a href=\"https:\/\/www.ebi.ac.uk\/services\" target=\"_blank\" rel=\"noopener noreferrer\">EMBL-EBI<\/a> &#8211;\u00a0 European Bioinformatics Institute tools &amp; data resources<\/p>\n<p><a href=\"https:\/\/expasy.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">ExPASy<\/a> &#8211; Bioinformatics Resource Portal<\/p>\n<p><a href=\"http:\/\/haddock.science.uu.nl\/services\/HADDOCK\/haddock.php\" target=\"_blank\" rel=\"noopener noreferrer\">HADDOCK<\/a> &#8211; Software for modeling complexes using NMR data<\/p>\n<p><a href=\"https:\/\/zhanglab.ccmb.med.umich.edu\/I-TASSER\/\" target=\"_blank\" rel=\"noopener noreferrer\">I-TASSER<\/a> &#8211; Protein structure &amp; function predictions<\/p>\n<p><a href=\"http:\/\/www.major.iric.ca\/MC-Sym\/\" target=\"_blank\" rel=\"noopener noreferrer\">MCFold | MCSym<\/a> &#8211; Pipeline for predicting secondary structure &amp; 3D modeling of RNA<\/p>\n<p><a href=\"http:\/\/www.onemoonscientific.com\/nmrviewj\" target=\"_blank\" rel=\"noopener noreferrer\">NMRViewJ<\/a>\u00a0&#8211; Software for visualization of NMR spectra<\/p>\n<p><a href=\"http:\/\/www.nmrfam.wisc.edu\/\" target=\"_blank\" rel=\"noopener noreferrer\">NMRFAM<\/a>\u00a0&#8211; Software for NMR analysis<\/p>\n<p><a href=\"http:\/\/www3.mpibpc.mpg.de\/groups\/zweckstetter\/_links\/software_pales.htm\" target=\"_blank\" rel=\"noopener noreferrer\">PALES<\/a>\u00a0&#8211; Prediction of alignment &amp; fitting to Residual Dipolar Coupling (RDC) values<\/p>\n<p><a href=\"http:\/\/rnacomposer.cs.put.poznan.pl\/Home\" target=\"_blank\" rel=\"noopener noreferrer\">RNAComposer<\/a> &#8211; 3D structure prediction of RNA using secondary structure<\/p>\n<p><a href=\"http:\/\/rna.urmc.rochester.edu\/RNAstructureWeb\/\" target=\"_blank\" rel=\"noopener noreferrer\">RNA Structure Weberver<\/a> &#8211; Predict RNA secondary structure from sequence<\/p>\n<p><a href=\"https:\/\/www.wenmr.eu\/wenmr\/\" target=\"_blank\" rel=\"noopener noreferrer\">WeNMR<\/a> &#8211; Webserver for NMR &amp; SAXS data processing<\/p>\n<p><a href=\"http:\/\/nmr.cit.nih.gov\/xplor-nih\/\" target=\"_blank\" rel=\"noopener noreferrer\">Xplor-NIH<\/a> &#8211; Molecular dynamics simulation software<\/p>\n<hr \/>\n<h3><strong><span style=\"color: #003366\">Other<\/span><\/strong><\/h3>\n<hr \/>\n<p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\" target=\"_blank\" rel=\"noopener noreferrer\">PubMed<\/a><\/p>\n<p><a href=\"http:\/\/www.rnasociety.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">RNAsociety<\/a><\/p>\n<p><a href=\"http:\/\/www.rcsb.org\/pdb\/home\/home.do\" target=\"_blank\" rel=\"noopener noreferrer\">Protein Data Bank<\/a><\/p>\n<p><a href=\"https:\/\/sites.google.com\/a\/umich.edu\/the-center-for-hiv-rna-studies\/\" target=\"_blank\" rel=\"noopener noreferrer\">The Center for HIV-1 RNA Research (CRNA)<\/a><\/p>\n<p><a href=\"https:\/\/www.niaid.nih.gov\/research\/centers-aids-research\" target=\"_blank\" rel=\"noopener noreferrer\">Centers For AIDS Research (CFAR)<\/a><\/p>\n<p><a href=\"https:\/\/twitter.com\/tolbertrnalab\">TolbertLab_tweet<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p><strong>Tools<\/strong><\/p>\n<p><a href=\"http:\/\/ambermd.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">AmberMD<\/a> &#8211; Molecular dynamics simulation software<\/p>\n<p><a href=\"http:\/\/www.embl-hamburg.de\/biosaxs\/software.html\" target=\"_blank\" rel=\"noopener noreferrer\">ATSAS<\/a>\u00a0&#8211; Small-angle X-ray scattering processing &amp; analysis software suite<\/p>\n<p><a href=\"https:\/\/www.ebi.ac.uk\/services\" target=\"_blank\" rel=\"noopener noreferrer\">EMBL-EBI<\/a> &#8211;\u00a0 European Bioinformatics Institute tools &amp; data resources<\/p>\n<p><a href=\"https:\/\/expasy.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">ExPASy<\/a> &#8211; Bioinformatics Resource Portal<\/p>\n<p><a href=\"http:\/\/haddock.science.uu.nl\/services\/HADDOCK\/haddock.php\" target=\"_blank\" rel=\"noopener noreferrer\">HADDOCK<\/a> &#8211; Software for modeling complexes using NMR data<\/p>\n<p><a href=\"https:\/\/zhanglab.ccmb.med.umich.edu\/I-TASSER\/\" target=\"_blank\" rel=\"noopener noreferrer\">I-TASSER<\/a> &#8211; Protein structure &amp; function predictions<\/p>\n<p><a href=\"http:\/\/www.major.iric.ca\/MC-Sym\/\" target=\"_blank\" rel=\"noopener noreferrer\">MCFold | MCSym<\/a> &#8211; Pipeline for predicting secondary structure &amp; 3D modeling of RNA<\/p>\n<p><a href=\"http:\/\/www.onemoonscientific.com\/nmrviewj\" target=\"_blank\" rel=\"noopener noreferrer\">NMRViewJ<\/a>\u00a0&#8211; Software for visualization of NMR spectra<\/p>\n<p><a href=\"http:\/\/www.nmrfam.wisc.edu\/\" target=\"_blank\" rel=\"noopener noreferrer\">NMRFAM<\/a>\u00a0&#8211;<\/p>\n<p><a href=\"https:\/\/caslabs.case.edu\/tolbert\/links\/\" class=\"more-link\">Continue reading&#8230; <span class=\"screen-reader-text\">Links<\/span><\/a><\/p>\n","protected":false},"author":209,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"spay_email":""},"_links":{"self":[{"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/pages\/48"}],"collection":[{"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/users\/209"}],"replies":[{"embeddable":true,"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/comments?post=48"}],"version-history":[{"count":10,"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/pages\/48\/revisions"}],"predecessor-version":[{"id":595,"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/pages\/48\/revisions\/595"}],"wp:attachment":[{"href":"https:\/\/caslabs.case.edu\/tolbert\/wp-json\/wp\/v2\/media?parent=48"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}